Find and execute external command-line tools — rave_command_line_path • raveio

Find and execute external command-line tools

Usage

normalize_commandline_path(
  path,
  type = c("dcm2niix", "freesurfer", "fsl", "afni", "others"),
  unset = NA
)

cmd_dcm2niix(error_on_missing = TRUE, unset = NA)

cmd_freesurfer_home(error_on_missing = TRUE, unset = NA)

cmd_fsl_home(error_on_missing = TRUE, unset = NA)

cmd_afni_home(error_on_missing = TRUE, unset = NA)

cmd_homebrew(error_on_missing = TRUE, unset = NA)

is_dry_run()

Arguments

path: path to normalize
type: type of command
unset: default to return if the command is not found
error_on_missing: whether to raise errors if command is missing

Value

Normalized path to the command, or unset if command is missing.