Image registration across different modals. Normalize brain 'T1'-weighted 'MRI' to template brain and generate subject-level atlas files.
Arguments
- subject
character (subject code, or project name with subject code), or
RAVESubject
instance.
Value
A processing instance, see YAELProcess
Examples
library(raveio)
process <- as_yael_process("testtest2")
# This example requires extra demo data & settings.
if (FALSE) { # \dontrun{
# Import and set original T1w MRI and CT
process$set_input_image("/path/to/T1w_MRI.nii", type = "T1w")
process$set_input_image("/path/to/CT.nii.gz", type = "CT")
# Co-register CT to MRI
process$register_to_T1w(image_type = "CT")
# Morph T1w MRI to 0.5 mm^3 MNI152 template
process$map_to_template(
template_name = "mni_icbm152_nlin_asym_09b",
native_type = "T1w"
)
} # }